RNA.dk 

List of computational tools for nucleic acid prediction and design:

• Pfold, prediction
• Foldalign
• RNAalifold
• NanoTiler, design
• Nano-Engineer, design
• SARSE, prediction
• DNA designer, design

RNA Workbench

A web-based framework is being developed to provide analyses and overviews of ncRNA related data. A "Google maps" like alignment viewer, an organism viewer and a limited set of analyses work. A function viewer
and more methods and data are being added, as needed by the rest of the group. We will integrate existing tools, so they work together and are easy to use, and make highly scalable ways to survey their results.

Snapshots of the package are accessible and available from

http://genomics.dk:8001/RNAport (web access)
ftp://genomics.dk/pub/GOFFICE.tar.gz (ftp download)

RNAfolder

RNAfolder is a Windows program for predicting and editing RNA secondary structures.

https://aula.au.dk/courses/RNAFOLDER/

SARSE

SARSE is a scientific data editor that uses the extendable column format, allows interactive overview, tracks editing history and has a user extendable tool box (Andersen et al., 2007). Two packages have been developed: SARSE - RNA prediction package and SARSE - DNA nanotechnology package, that are available here:

http://sarse.kvl.dk/
http://www.cdna.dk/origami/